PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g011670.2.1
Common NameLOC101255681
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 375aa    MW: 42395.2 Da    PI: 6.5152
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g011670.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.93.4e-1188123540
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 
                         k+ rr+++NReAAr+sR+RKka++++Le+   +L +
  Solyc04g011670.2.1  88 KVLRRLAQNREAARKSRLRKKAYVQQLENSKLKLIQ 123
                         788*************************86555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.9E-584144IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.69186128IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.85E-688123No hitNo description
PfamPF001709.7E-888118IPR004827Basic-leucine zipper domain
PROSITE patternPS00036091106IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.3E-791116No hitNo description
PfamPF141441.5E-30175250IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNSSTYTQFV ASRRMGICEP IHQIGMWDDF NASCPSTSTT MILEVEKCLE DQIPMMDKRL  60
DIETEDTSHG TVGTSNRYEA ETSKPIEKVL RRLAQNREAA RKSRLRKKAY VQQLENSKLK  120
LIQLEQELDR ARKQGLYVGA GLDASQLSYS GTASSGTAVF DTEYGQWVEE QNRQTNDLRN  180
ALHHSQISEA ELRIIVDGCL NHYYELFRVK ATAAKADVLY IMSGMWKTSA ERFFMWIGGF  240
RPSELLKVLT PHLELLTEQQ LREVCNLRQS CQQAEDALSQ GMVKLHQILA EAVAAGQLGE  300
GNYSLPQMGP AIEKLEALVR FVNQADHLRQ ETLQQMSRIL NTLQAAQGLL ALGEYFERLR  360
VLSSHWATRL HEPA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.129200.0cell culture| fruit| leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00642SELEXTransfer from LOC107771743Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236730.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A isoform X2
SwissprotP142320.0TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBLK4BPM00.0K4BPM0_SOLLC; Uncharacterized protein
STRINGSolyc04g011670.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Representative plantOGRP26791132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-159bZIP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]